Install R in linux  ============  In CRAN home page, the latest version is not available. So, in fedora,  Open the terminal   yum list R  --> To check the latest available version of r  yum install R --> install R version  yum update R --> update current version to latest one    0 find help  ============  ?exact topic name (  i.e.   ?mean )    0.0 INSTALL 3rd party package   ====================  install.packages('mvtnorm' , dependencies = TRUE , lib='/home/alamt/myRlibrary/')   #  install new package    BED file parsing (Always use read.delim it is the best)   library(MASS)  #library(ggplot2)   dirRoot="D:/research/F5shortRNA/TestRIKEN/Rscripts/"  dirData="D:/research/F5shortRNA/TestRIKEN/"  setwd(dirRoot)  getwd()   myBed="test.bed"  fnmBed=paste(dirData, myBed, sep="") # ccdsHh19.bed   tmp.bed       ## Read bed use read.delim - it is the  best  mybed=read.delim(fnmBed, header = FALSE, sep = "\t", quote = ...

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