package com.cbrc.pipeline2; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.DataInputStream; import java.io.FileInputStream; import java.io.FileWriter; import java.io.InputStreamReader; public class Test { String foldIn; String fnmFasta; String foldOut; String fnmOut; void init(String rootIn, String rootOut, String fnmInFasta, String fOut) { this.foldIn = rootIn; this.fnmFasta = this.foldIn + fnmInFasta; this.foldOut = rootOut; this.foldOut = this.foldOut + fOut; } void loadFasta(){ try { FileInputStream fstre...