y=[1:10]; mycell = cell(10,1); for i=1:5 mycell(i)=cellstr('mRNA prom'); end for i=6:10 mycell(i)=cellstr('lncRNA prom'); end boxplot(y , mycell ,'notch','on','whisker',1);
// use built-in function samplesize = size( matrix , 1); c = cvpartition(samplesize, 'kfold' , k); % return the indexes on each fold ///// output in matlab console K-fold cross validation partition N: 10 NumTestSets: 4 TrainSize: 8 7 7 8 TestSize: 2 3 3 2 ////////////////////// for i=1 : k trainIdxs = find(training(c,i) ); %training(c,i); // 1 means in train , 0 means in test testInxs = find(test(c,i) ); % test(c,i); // 1 means in test , 0 means in train trainMatrix = matrix ( matrix(trainIdxs ), : ); testMatrix = matrix ( matrix(testIdxs ), : ); end //// now calculate performance %% calculate performance of a partiti...
Main website for learning SLRUM http://slurm.schedmd.com/tutorials.html Submit a job with name and outputfile name(This will overwrite the parameters in shell file header ) sbatch -J job1 -o job1.out --partition=batch myscript.sh Basic shell script for job #!/bin/sh # #SBATCH --job-name=testJob #SBATCH --time=01:00:00 #SBATCH --nodes=1 #SBATCH --ntasks=1 #SBATCH --partition=dragon-default # # Display all variables set by slurm env | grep "^SLURM" | sort # cd /projects/dragon/FANTOM5/processed_data_feature ## All my commands for job will go here date;time; mkdir t1 How to submit a batch job sbatch myscript.sh How to check the list of jobs of a user squeue -u user1 squeue -u user1 -l # it will show in details How to check the whole history and status of a job scontrol show job=JOBID How to use one particular node in interactive mode. Useful when all...
Useful tutorial http://www.mathworks.com/products/global-optimization/description3.html Best example of implementatoin with Constraint, objective function http://www.mathworks.com/help/gads/examples/constrained-minimization-using-the-genetic-algorithm.html More about how to use multi-objective http://www.mathworks.com/discovery/multiobjective-optimization.html http://www.mathworks.com/help/gads/examples/performing-a-multiobjective-optimization-using-the-genetic-algorithm.html http://www.mathworks.com/help/gads/examples/multiobjective-genetic-algorithm-options.html Example GAMULTOBJ (can handle Multiple Objective) GA(can handle 1 objective) Constrained Minimization Problem We want to minimize a simple fitness function of two variables x1 and x2 min f(x) = 100 * (x1^2 - x2) ^2 + (1 - x1)^2; x min f(x) = 100 * (x1^2 + x2) ^2 + (1 + x1)^2; x such that the following two nonlinear constraints and bounds are satisfied x1*x2 + x1 - x2 + 1.5 <...
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